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SRX8783922: GSM4680577: anaerobically grown cells rep 1; Acidithiobacillus ferrooxidans; RNA-Seq
1 ILLUMINA (Illumina MiSeq) run: 2.1M spots, 263.4M bases, 136.9Mb downloads

Submitted by: NCBI (GEO)
Study: Transcriptome profiling of hydrogen-oxidizing Acidithiobacillus ferrooxidans
show Abstracthide Abstract
The study identified a total of 3169 gene transcripts (98.4% coverage). By comparing the anaerobic versus aerobic H2-oxidizing At. ferrooxidans cultures, a total of 371 DEGs were found. Of these, 168 DEGs were increased significantly during the aerobic growth on H2 (with O2 as the sole electron acceptor), while 203 DEGs increased significantly during anaerobic growth on H2 (with Fe3+ as the sole electron acceptor). Overall design: Transcriptome profiling of gene expression during aerobic and anaerobic growth of Acidithiobacillus ferrooxidans cells on hydrogen.
Sample: anaerobically grown cells rep 1
SAMN15590247 • SRS7052651 • All experiments • All runs
Library:
Instrument: Illumina MiSeq
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: The total RNA was extracted with a TRI reagent (Sigma-Aldrich) and was treated with a TURBO DNA-free kit (Ambion) to remove the contaminating DNA. The cDNA libraries were constructed using the ScriptSeq™ Complete Kits (Bacteria) (Illumina), including Ribo-ZeroTM technology for ribosomal RNA removing and ScriptSeq v2 RNA-Seq Library Preparation Kit. Sequencing was performed on the Illumina MiSeq platform with MiSeq Reagent Kit v2 (500-cycles), which generated 250-bp paired-end reads.
Experiment attributes:
GEO Accession: GSM4680577
Links:
Runs: 1 run, 2.1M spots, 263.4M bases, 136.9Mb
Run# of Spots# of BasesSizePublished
SRR122791482,069,525263.4M136.9Mb2020-11-23

ID:
11419189

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